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Case law › Section 139(1)

Section 139(1)

Authorities that bear on section 139(1) of the Income-tax Act, 1961. Each one tells you what it decided and what to do if it applies to you.

The Income-tax Act, 1961 was repealed on 1 April 2026. It still governs income earned up to 31 March 2026, and every proceeding about those years however late — assessment, reassessment, rectification, penalty, revision and appeal alike. Income earned from 1 April 2026 is governed by the Income-tax Act, 2025. What changed, and which Act governs your year →

Section 139(1) — the law in short

What the courts have decided on section 139(1), in one screen. Read this first; open an entry when you need the facts, the reasoning and the source.

Listed strongest first: Supreme Court, then High Court, then Tribunal, then CBDT. Nothing here has yet been read in full by a chartered accountant — open an entry to see where it came from.

Section 139(1) — 93 entries

Worked examples

Notice situations in which section 139(1) does the work, taken from the first line to the last. Each step carries the authority that licenses it.
A hundred per cent of the shares moved to a new Indian subsidiary of the same foreign parent, and the first profitable year lost the whole brought-forward loss The shares of my closely held company moved from the foreign parent to that parent's new Indian subsidiary, and the officer has struck out the brought-forward business loss, the unabsorbed depreciation, the house property loss and the capital loss under s.79 - how much of that can I get back? 7 steps · 21 authorities · s.79, s.79(1), s.79(2), s.79(2)(a) A prosecution show-cause for two years where no return was filed The department wants to prosecute me for two years I never filed. I filed as soon as they asked, and all the tax was already paid by deduction and advance tax. How much trouble am I actually in? 8 steps · 15 authorities · s.276CC, s.278E, s.279, s.139(1) A return revised to bring in a survey surrender, and an officer who says it was never a valid revision We revised the return within time to bring in what was surrendered in a survey, and the officer now says s.139(5) does not cover a deliberate understatement and that the original return stands - how do we answer that? 9 steps · 40 authorities · s.139(5), s.133A, s.292C, s.139(1) A s.139(9) notice on a turnover difference between Form 3CD and the return, answered eight months after the fifteen days ran out The processing centre called my return defective, the fifteen days have gone and the portal now shows the return as invalid - is the loss carry-forward and the deduction gone, and what do I do first? 8 steps · 55 authorities · s.139(9), s.139(9) proviso, s.139(9) Explanation, s.139(1) A shop sold in June 2023, Rs 95,00,000 paid to a builder, the balance left in a savings account, and an exemption confined to what was spent My client never opened a capital gains account and the officer has cut his s.54F exemption down to what he actually paid the builder - is the belated return argument any use to me, and what is left after it? 8 steps · 25 authorities · s.54, s.54F, s.54(2), s.54F(1) Form 10-IC filed 108 days after the due date, the 22 per cent rate refused in an intimation nobody appealed, and the condonation window closing in March My company ticked s.115BAA in the return but Form 10-IC went in late, the CPC has taxed it at the normal rate, the rectification has been refused and the appeal time is long gone - what is actually left? 7 steps · 23 authorities · s.115BAA, s.115BAA(2), s.115BAA(3), s.115BAA(5) I sold my flat below the ready reckoner value - what is the taxable gain, and in which year The registrar valued my flat well above what I sold it for, I spent money on it over the years and I paid off my brother and my tenant. What is my capital gain, and does it fall in the year of the agreement or the year of the deed? 8 steps · 29 authorities · s.45, s.48, s.2(47), s.50C I've put the plot money into a flat and into bonds - how much of the gain does that actually save? I sold a plot, paid part of the money to a builder for a flat and part into capital gain bonds, and I filed my return late. How much of the gain is actually exempt, and what have I already lost? 8 steps · 27 authorities · s.54F, s.54EC, s.54, s.54F(4) The State audit finished in January, the return went in late, and the whole 80P deduction has gone on the date alone Our society filed after the due date because the statutory audit was not finished. Is the deduction really lost on that alone, and what happens to the penalties on our cash counter and the tax on our withdrawals? 8 steps · 25 authorities · s.80P, s.80P(2)(c), s.80P(4), s.80AC Three years of Schedule FA left blank, and a notice proposing Rs 10 lakh for each of them I never filled Schedule FA for my foreign brokerage account or my employer's stock plan, and the notice proposes Rs 30 lakh of penalty. Is it automatic, and does the higher threshold that came in recently help me? 8 steps · 12 authorities · BMA s.43, s.139(1), s.6(6), s.5

Explained in this library

What section 139(1) does, in plain English, before you read what the courts made of it.

Revised, belated and updated returns

I missed reporting some income two years ago. Can I still fix it, and what will it cost?

s.276CC: prosecution for not filing the return

A s.276CC notice has come for a year where the return went in late. What actually has to be shown, and does the proviso save me?

s.40(a)(ia) disallowance

I did not deduct TDS on a payment to a resident vendor. How much of my expense do I lose, and can I get it back?

s.54 and s.54F: buying your way out of the gain

If I put the sale proceeds into another house, how much tax do I actually save?

s.80AC and a claim first made in a revised return

We filed by the due date but claimed the deduction for the first time in a revised return. Does s.80AC still take it away?

s.80AC: file by the due date, or the deduction goes

Our return was late. Does that by itself kill the deduction we claimed?

s.80M: pass the dividend on, and you are not taxed on it twice

My company received a dividend and paid one out. Can I deduct what I received, and does it matter that I do not hold a majority in the paying company?

s.89A: the 401(k) that India taxes before America does

I have moved back to India and still hold a 401(k) or a UK pension. Do I have to pay Indian tax on income accruing in it every year?

section 36(1)(va): employees' contributions and the due date under the relevant law

My auditor has reported in Form 3CD that some months' PF and ESI were deposited a few days late, and the department has disallowed the employees' share even though I paid every rupee before I filed my return. I thought section 43B let me pay by the return due date. Can they do this, and do I get the deduction in the year I paid?

section 43B: deductions allowed only on actual payment

I keep my books on the mercantile basis and I have provided for GST, provident fund, a bonus and interest on my bank loan. The assessing officer has added all of it back because I had not paid it by 31 March. Can he do that, and do I lose the deduction for good?

The concessional regimes: 115BAC and 115BAA

Should I stay in the concessional regime, and what exactly am I giving up by doing so?

The fifteen days on a s.139(9) notice, and what an invalid return costs

CPC says my return is defective and gives me fifteen days. What actually makes a return defective, and what happens if I miss the date?

The s.276CC proviso: which tax figure, and how much of it

All my tax was paid by deduction at source and advance tax. Does the proviso to s.276CC keep me out of the prosecution, and what is the figure I have to stay under?