VittSphere ONE Calculators Blog CA Firm CA Prabhakar Kumar · FCA · ICAI 560762
Case law › Worked examples › Four years of wage-revision arrears paid in one month, relief claimed in the return, and a s.143(1) intimation that took all of it back

Four years of wage-revision arrears paid in one month, relief claimed in the return, and a s.143(1) intimation that took all of it back

The processing unit has disallowed my client's s.89 relief because Form 10E was not on the portal when the return was processed - can the relief still be had, and was the employer wrong to deduct on the whole amount?

The Income-tax Act, 1961 was repealed on 1 April 2026. It still governs income earned up to 31 March 2026, and every proceeding about those years however late — assessment, reassessment, rectification, penalty, revision and appeal alike. Income earned from 1 April 2026 is governed by the Income-tax Act, 2025. What changed, and which Act governs your year →
A worked example, not advice on your case. The facts below are constructed to be typical, not real. Every legal step links to the authority behind it — follow those links before you rely on any of this, because no chartered accountant has yet signed this page off. Your facts will differ, and the difference is usually where the case is won or lost.

The situation

The client is an assistant manager in a public sector undertaking at Bhubaneswar, assessed at a ward there. A wage revision settlement signed on 28 August 2024 gave arrears for the period 1 January 2020 to 31 March 2024. The arrears of Rs 11,84,000 were paid on 30 September 2024, in FY 2024-25, and the employer deducted tax of Rs 3,46,000 on the whole of them in that month along with the regular salary. No Form 10E was given to the employer, so no relief was worked into the deduction. The return for AY 2025-26 was filed on 22 July 2025 declaring total income of Rs 19,60,000 and claiming relief under s.89 of Rs 2,18,000, computed by the client's accountant on a spreadsheet. Form 10E was not uploaded. The intimation under s.143(1) dated 14 January 2026 withdraws the entire relief and raises a demand of Rs 2,41,000 with interest under s.234B and s.234C. An application under s.154 was filed on 3 February 2026 and no order has been passed on it. The client holds the settlement, the year-wise arrears sheet certified by the employer, Form 16 for FY 2024-25, and his own returns and intimations for AY 2020-21 to AY 2024-25.

Before anything else

Upload Form 10E on the portal this week, before touching the rectification or the appeal. The relief is computed from that form, the processing unit will not recompute anything without it, and both remedies are refused on the same sentence while it is missing. Upload it for the assessment year in which the arrears were received, not for the years they relate to, which is the error that produces a second rejection. Then pull the returned and assessed total income for each of the five back years, because the worksheet is built from those figures and not from the arrears sheet.

Working it through

8 steps. Each one shows the authorities it stands on.
  1. 1

    File Form 10E now and press the rectification rather than a fresh return.

    The form is the machinery, not the entitlement. Section 89 gives the relief and Rule 21A prescribes how it is computed; the form is what carries the computation to the officer. A Tribunal Bench has held that filing Form 10E is a procedural requirement and has directed the officer to accept a form filed after the intimation under s.143(1) and to grant the relief after verification, following the reasoning of another Bench that where a prescribed form goes to a relief the requirement to file it is directory and not mandatory. That is the direct answer to the sentence in the intimation, and it is the ground on which the rectification should be framed.

    Careful here. It is a Tribunal order and binds nobody, and the library's own statement of the section and the rules is marked as having no later treatment found. The processing unit does not apply Tribunal orders; expect the rectification to be rejected mechanically and budget for an appeal under s.246A against the intimation. File the appeal in time rather than waiting for the rectification, because the two clocks run separately and the rectification may never be decided.
  2. 2

    Do not write to the employer about the deduction - s.192(2A) never got started.

    Section 192(2A) is what obliges the employer to compute the relief and give it in the deduction, and it operates only on the particulars furnished in Form 10E. A High Court has held that the employer cannot be found at fault for deducting tax at source on the whole amount in the absence of an application in that form. The general position points the same way: s.192(1) requires deduction on the estimated income of the employee under the head, so the duty is an honest and reasonable estimate, and another High Court has held that where the estimate was honest the employer is not in default even though the figure later turns out to be wrong.

    Careful here. The first of those two is marked as having no later treatment found. The Supreme Court has held that an honest estimate answers the penalty and not the tax or the interest, and that holding stands; the High Court decision above cannot be run against it. What has moved on that Supreme Court decision is the recovery limb alone, now codified by the 2012 proviso to s.201(1), which is why the library marks it superseded by amendment. None of this recovers a rupee for this client anyway; it is here so that the file does not turn into a complaint against the employer that goes nowhere.
  3. 3

    Fix the year of charge before computing anything, and check that no part of the arrears was already offered.

    Section 15 charges salary due from an employer whether paid or not, or paid or allowed though not due, so the year of charge is not always the year of the cheque. A High Court has held that once salary has accrued under the contract of service, a resolution passed after the close of the year cannot undo the accrual and at most operates as a waiver. Another has held that the whole of a compensation became due when the employee was released and was chargeable at that point, so spreading the payment over later years did not turn the instalments into salary of those years. Where arrears become due only on the settlement date, they are salary of FY 2024-25 and s.89 is the only relief available.

    Careful here. Run the five back years against the arrears sheet before filing the worksheet. If any part was already offered on accrual in an earlier year, it cannot be charged again in FY 2024-25, and that is a better point than the relief - it removes income rather than reducing tax on it. Equally, s.89 does not move the income into the earlier years; it refunds the extra tax the bunching caused and nothing more, and a client told otherwise will not understand the refund when it comes.
  4. 4

    Build the Rule 21A(2) worksheet from the total income of each back year, not from the arrears sheet.

    The computation has two halves. First, the tax on the total income of the year of receipt including the arrears, less the tax on that total income excluding them, which gives the tax the bunching produced. Second, the tax that the same arrears would have attracted had each slice been added to the total income of the year it relates to, aggregated. The relief is the excess of the first over the second, and it is nil where there is no excess. That means five separate recomputations for AY 2020-21 to AY 2024-25 on the total income as returned and assessed for each of those years, with the arrears slice added to each.

    Careful here. An accountant's spreadsheet built on the arrears sheet alone will not survive verification, because the second half of the computation depends on each back year's own total income and its own slab. Keep the intimations for the back years with the worksheet. The library's statement of the section and the rules is marked as having no later treatment found, so the mechanics set out above are the rule's own words rather than a decided construction of them. Nothing in this collection addresses what to do where one of those years was later reassessed or rectified, and the worksheet then has to be built on the figure as it finally stands.
  5. 5

    Separate anything in the package that is not arrears of salary, because the sub-rule and the answer both change.

    Section 89 reaches salary paid in arrears or in advance, salary for more than twelve months received in one year, a payment that is a profit in lieu of salary under s.17(3), and arrears of family pension, and the rule prescribes a different computation for each. Section 17(3) itself has three limbs - compensation at or in connection with termination or modification of the terms of employment, payments from a provident or other fund outside the listed exclusions, and sums received before joining or after ceasing employment - and the limb decides the treatment. A Tribunal Bench has held that where a Government-approved closure scheme engages the second proviso to s.10(10B) the whole of the compensation is exempt; the same Bench separately directed that relief under s.89 be allowed on the net gratuity brought to tax.

    Careful here. Those two entries decide exemption questions, not the computation of relief, and one of them turns on a specific approved scheme. A second Tribunal order in this collection, marked as having no later treatment found, holds that compliance with the conditions of the voluntary retirement rules is cumulative and that satisfying some of them is not enough - so do not assume a package described as ex gratia carries any exemption at all. On the present facts this is a check, not a ground.
  6. 6

    Check which regime the return for the year of receipt was filed under, and say so in the worksheet.

    The relief is an arithmetic comparison of tax on total income, so the regime that fixed the tax for FY 2024-25 fixes the first half of the computation, and each back year carries whatever regime was in force and was in fact adopted for it. The Board's annual circular under s.192 for FY 2024-25 consolidates the rates, the amendments made by the Finance Acts of 2023 and 2024 and the mechanics of the employer's deduction, and it is the document to put in front of anyone who disputes the rates used. State the regime for each of the six years on the face of the worksheet rather than leaving it to be inferred.

    Careful here. Nothing in this collection decides whether relief under s.89 is available at all where the total income of the year of receipt is computed under s.115BAC, or how the comparison is run where the back years were on the old regime and the receipt year is on the new. The approach taken here is read off the words of the section and the rule. Expect the point to be raised, and do not present it to the client as settled.
    What this rests on
  7. 7

    Fix the payroll for the current year so the same thing does not happen again.

    Relief under s.192(2A) has to be asked for before the payment, not after it. The employee gives the employer the particulars in the prescribed form and the employer computes the relief into the deduction; other income and losses go to the employer under s.192(2B), and a mid-year change of employer needs the previous employer's particulars so that one estimate covers the whole year. A High Court has held that the employer's liability is to deduct on the employee's taxable income and that a certificate from the employee is adequate where part of the receipt is exempt - which is the same principle: the employer acts on what he is given.

    Careful here. The employer has no power to give the relief on his own, and a request made by letter after the payment is worth nothing. Where the arrears run into a second instalment in FY 2025-26, the form has to go in before that instalment is processed. Watch the cash flow as well: the estimate comes out of the cash salary, and an employee who cannot fund it has no declaration available to reduce it.
  8. 8

    Handle the demand on its own track, and know which s.205 argument is not available here.

    The demand of Rs 2,41,000 is the arithmetic consequence of the withdrawn relief and will fall with it, but it is live in the meantime and the next refund is exposed. There is a line of authority that helps only in a different case: a High Court has held that s.205 bars a direct demand on the person from whose income tax was deducted, and that setting a later year's refund off against such a demand is an indirect recovery of the same tax, quashing both the demand and the adjustment. That works where the deductor deducted and did not deposit. Here the tax was deducted and deposited and appears in the tax credit statement, so the protection is not engaged.

    Careful here. That decision is marked in the library as one on which High Courts differ, so it is an argument even in the case it fits. Reconcile Form 16 against the credit statement before assuming the deposit was made, because a shortfall changes which remedy you are in. And nothing in this collection addresses interest under s.234B and s.234C computed on a demand created by a wrongly withdrawn relief - ask for it to be recomputed when the relief is restored rather than contesting it separately.
    What this rests on

Where this usually lands

Relief withdrawn only because the form was missing is usually restored, but rarely by the processing unit and rarely on the first application. The commonest path is a rejected rectification followed by a first appellate order restoring the relief subject to verification of the worksheet, two years or so after the intimation. Where the worksheet does not hold up against the back years' total incomes, the relief comes back reduced rather than in full, and that is at least as common as a clean restoration. The point that occasionally produces a bigger result is the accrual one - arrears already offered in an earlier year being taken out of the receipt year altogether - but it succeeds only where the earlier returns actually show them. Nothing here is won against the employer.

What to do

What this library could not tell you

Written down rather than papered over. These are points where the argument needed authority we do not hold, so the study stops short instead of guessing.

Every authority used above

17 entries. Nothing in this study cites anything outside the library.